ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
CHD7	320790	APOA1	11806	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	ARHGAP26	71302	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	ATP11A	50770	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	ATP5O	28080	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	AXIN1	12005	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	BCL11B	58208	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	BMP4	12159	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	BRWD1	93871	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	BUD13	215051	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	C21ORF59	0	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	C21ORF63	0	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	C21ORF66	67367	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	C22ORF24	0	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	C5ORF35	0	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	C9ORF106	0	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CACNG6	54378	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CAPZA2	12343	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CAV1	12389	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CAV2	12390	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CCDC93	70829	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CDH2	12558	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CFTR	12638	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CGN	70737	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CHPF	74241	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CRAT	12908	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CRYZL1	66609	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CTAG1B	0	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CTGF	14219	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	CTTNBP2	30785	19251738	ChIP-chip	MESC	2010-11-05
CHD7	320790	DDHD1	114874	19251738	ChIP-chip	MESC	2010-11-05

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.