ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
NACC1	66830	SPRY2	24064	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SOS1	20662	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SORBS1	20411	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SNX10	71982	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SNURF	84704	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SNRPN	84704	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SMYD2	226830	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SMS	20603	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SMARCA3	20585	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SLIT2	20563	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SLCO5A1	240726	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SLCO4C1	227394	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SLC6A8	102857	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SOX13	20668	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SOX2	20674	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SOX4	20677	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPRED2	114716	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPRED1	114715	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPPL3	74585	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPP1	81535	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPINT2	20733	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPIC	97848	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPESP1	66712	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPATS1	71020	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SPAG4L	76407	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SP7	170574	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SP3	20687	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SP1	20683	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SLC6A7	240332	18358816	ChIP-chip	MESC	2010-11-05
NACC1	66830	SLC6A15	103098	18358816	ChIP-chip	MESC	2010-11-05

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.