ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
MYC	17869	TXNDC14	66958	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBB2C	227613	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBA4	22145	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBA2	22143	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TTYH2	117160	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TTLL12	223723	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TTF2	74044	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TTC32	75516	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TTC27	74196	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TST	22117	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBB5	22154	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBD1	56427	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TXN2	56551	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TXN1	22166	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TXLNA	109658	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TWISTNB	28071	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUT1	70044	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUSC4	56032	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUFM	233870	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBGCP3	259279	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TUBGCP2	74237	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TSSK6	83984	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TSR2	69499	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TSR1	104662	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TRIT1	66966	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TRIP13	69716	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TRIM8	93679	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TRIM65	338364	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TRIM59	66949	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	TRIM46	360213	18358816	ChIP-chip	MESC	2010-11-05

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.