ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
ASH2L	23808	MRPL15	27395	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TCEA1	21399	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	RB1CC1	12421	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	SNHG6	73824	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	CSPP1	211660	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	SULF1	240725	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	PRDM14	383491	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	GM5523	433273	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	EYA1	14048	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	RPL7	19989	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TCEB1	67923	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	GDAP1	14545	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	LMBRD1	68421	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	4930521A18RIK	74708	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	1700001G17RIK	67503	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	DST	13518	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	CCDC115	69668	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	PTPN18	19253	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	HS6ST1	50785	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	UGGT1	320011	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	ACTR1B	226977	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	UNC50	67387	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	EIF5B	226982	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	PDCL3	68833	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	RPL31	114641	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	CREG2	263764	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	MAP4K4	26921	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	MRPS9	69527	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TGFBRAP1	73122	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TPP2	22019	23239880	ChIP-chip	MESC	2012-12-15

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.