ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	chipType	cellType	modification_date
ESRRB	26380	STK31	77485	ChIP-seq	MESC	2011-03-06
ESRRB	26380	KCMF1	74287	ChIP-seq	MESC	2011-03-06
ESRRB	26380	D230025D16RIK	234678	ChIP-seq	MESC	2011-03-06
ESRRB	26380	VPS41	218035	ChIP-seq	MESC	2011-03-06
ESRRB	26380	BC004004	80748	ChIP-seq	MESC	2011-03-06
ESRRB	26380	LAD1	16763	ChIP-seq	MESC	2011-03-06
ESRRB	26380	SNN	20621	ChIP-seq	MESC	2011-03-06
ESRRB	26380	NANOGPD	634428	ChIP-seq	MESC	2011-03-06
ESRRB	26380	LYRM5	67636	ChIP-seq	MESC	2011-03-06
ESRRB	26380	ZFP382	233060	ChIP-seq	MESC	2011-03-06
ESRRB	26380	TMEM143	70209	ChIP-seq	MESC	2011-03-06
ESRRB	26380	RASSF1	56289	ChIP-seq	MESC	2011-03-06
ESRRB	26380	2010109K11RIK	72123	ChIP-seq	MESC	2011-03-06
ESRRB	26380	TBC1D22A	223754	ChIP-seq	MESC	2011-03-06
ESRRB	26380	PKP2	67451	ChIP-seq	MESC	2011-03-06
ESRRB	26380	TPX2	72119	ChIP-seq	MESC	2011-03-06
ESRRB	26380	BC025920	268319	ChIP-seq	MESC	2011-03-06
ESRRB	26380	2310004N24RIK	69535	ChIP-seq	MESC	2011-03-06
ESRRB	26380	AP4S1	11782	ChIP-seq	MESC	2011-03-06
ESRRB	26380	TXNL4A	27366	ChIP-seq	MESC	2011-03-06
ESRRB	26380	MIR291A	100049715	ChIP-seq	MESC	2011-03-06
ESRRB	26380	FXYD6	59095	ChIP-seq	MESC	2011-03-06
ESRRB	26380	UPP1	22271	ChIP-seq	MESC	2011-03-06
ESRRB	26380	STMN1	16765	ChIP-seq	MESC	2011-03-06
ESRRB	26380	CLN8	26889	ChIP-seq	MESC	2011-03-06
ESRRB	26380	GPC1	14733	ChIP-seq	MESC	2011-03-06
ESRRB	26380	RAPGEFL1	268480	ChIP-seq	MESC	2011-03-06
ESRRB	26380	MYC	17869	ChIP-seq	MESC	2011-03-06
ESRRB	26380	CSTF2T	83410	ChIP-seq	MESC	2011-03-06
ESRRB	26380	SHANK1	243961	ChIP-seq	MESC	2011-03-06

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.