ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
HCIF1	100036250	ZMAT5	67178	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFYVE1	217695	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP98	109889	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP91	109910	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP84	74352	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP82	330502	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP691	195522	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP689	71131	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP661	72180	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP566	72556	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP444	72667	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP408	381410	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP354A	21408	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP286	192651	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP263	74120	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP219	69890	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZFP189	230162	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZDHHC14	224454	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZCCHC8	70650	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	ZBTB40	230848	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	YWHAG	22628	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	YIPF2	74766	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	XPC	22591	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	WHSC2	24116	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	WDR77	70465	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	WDR27	71682	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	VTI1B	53612	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	VRK1	22367	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	VPS52	224705	20581084	ChIP-seq	MESC	2011-05-05
HCIF1	100036250	VPS25	28084	20581084	ChIP-seq	MESC	2011-05-05

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.