ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
NR0B1	11614	0610011F06RIK	68347	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	0610038K03RIK	68371	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	0910001A06RIK	223601	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	40422	0	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1110005A03RIK	74319	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1110008J03RIK	100764	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1110014K08RIK	319370	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1110020P15RIK	66152	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1110032E23RIK	68659	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1110034C04RIK	68734	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1190017O12RIK	68936	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1200014J11RIK	66874	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1200015N20RIK	71721	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1300013J15RIK	67473	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1600021P15RIK	239796	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700001C19RIK	75462	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700001P01RIK	72215	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700012A16RIK	71836	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700013E18RIK	209601	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700019D03RIK	67080	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700022L09RIK	66934	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700029M20RIK	73937	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700030J22RIK	69528	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700040L02RIK	73287	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700102P08RIK	112418	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1700127D06RIK	16604	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1810012P15RIK	66274	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1810013C15RIK	329015	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1810024B03RIK	329509	18358816	ChIP-chip	MESC	2010-11-05
NR0B1	11614	1810033B17RIK	69189	18358816	ChIP-chip	MESC	2010-11-05

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.