ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
ZIC3	22773	LAMA1	16772	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IRF1	16362	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IL6ST	16195	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IL17RD	171463	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IL17D	239114	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IGF2BP1	140486	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IFITM2	80876	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HS6ST2	50786	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HOXB13	15408	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HNRPM	76936	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HNRPLL	72692	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HNRPH1	59013	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HLF	217082	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	IRGM	15944	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	ISL1	16392	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	ITGA1	109700	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KLF9	16601	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KLF6	23849	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KLF2	16598	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KITL	17311	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KIF23	71819	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KCTD3	226823	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	KCTD12	239217	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	JUP	16480	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	JMJD4	194952	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	JARID2	16468	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	ITM2A	16431	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	ITGA9	104099	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HIVEP2	15273	20872845	ChIP-chip	MESC-E14	2010-11-05
ZIC3	22773	HIST1H3H	360198	20872845	ChIP-chip	MESC-E14	2010-11-05

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.