ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
ASH2L	23808	GPIHBP1	68453	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	NOL12	97961	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	MAFF	17133	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	NPTXR	73340	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	APOBEC3	80287	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	MGAT3	17309	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	SMCR7L	239555	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	ATF4	11911	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	ADSL	11564	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	SLC25A17	20524	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	RBX1	56438	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	RANGAP1	19387	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TST	22117	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	EIF3D	55944	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	ZFP41	22701	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	EXOSC4	109075	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	CPSF1	94230	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	SLC39A4	72027	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	FOXH1	14106	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	ZFP7	223669	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	RPL8	26961	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	1110038F14RIK	117171	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	APOL6	71939	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	APOL8	239552	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TXN2	56551	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TOB2	57259	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	TNFRSF13C	72049	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	ALG10B	380959	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	GM4371	100043335	23239880	ChIP-chip	MESC	2012-12-15
ASH2L	23808	SLC38A2	67760	23239880	ChIP-chip	MESC	2012-12-15

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.