ESCAPE

List of tables:

Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
KDM5B	75605	9330133O14RIK	100689703	21448134	ChIP-seq	MESC	2011-03-31
SMC3	13006	DEFB19	100579149	20720539	ChIP-seq	MESC	2012-02-15
SMC1A	24061	DEFB19	100579149	20720539	ChIP-seq	MESC	2012-02-15
YY1	22632	SNORD42B	100529077	21170310	ChIP-seq	MESC	2010-12-22
RCOR3	214742	MIR3085	100526549	21632747	ChIP-seq	MESC	2011-06-06
REST	19712	MIR3085	100526549	21632747	ChIP-seq	MESC	2011-06-06
YY1	22632	MIR3085	100526549	21170310	ChIP-seq	MESC	2010-12-22
SIN3B	20467	MIR3067	100526532	21632747	ChIP-seq	MESC	2011-06-06
RCOR3	214742	MIR3067	100526532	21632747	ChIP-seq	MESC	2011-06-06
REST	19712	MIR3067	100526532	21632747	ChIP-seq	MESC	2011-06-06
RCOR3	214742	MIR1843	100526530	21632747	ChIP-seq	MESC	2011-06-06
SIN3B	20467	MIR3078	100526520	21632747	ChIP-seq	MESC	2011-06-06
RCOR3	214742	MIR3078	100526520	21632747	ChIP-seq	MESC	2011-06-06
SIN3A	20466	MIR3065	100526518	21632747	ChIP-seq	MESC	2011-06-06
REST	19712	MIR3108	100526511	21632747	ChIP-seq	MESC	2011-06-06
SIN3B	20467	MIR3089	100526499	21632747	ChIP-seq	MESC	2011-06-06
RCOR3	214742	MIR3089	100526499	21632747	ChIP-seq	MESC	2011-06-06
REST	19712	MIR3066	100526470	21632747	ChIP-seq	MESC	2011-06-06
SIN3B	20467	MIR1249	100526461	21632747	ChIP-seq	MESC	2011-06-06
REST	19712	MIR1249	100526461	21632747	ChIP-seq	MESC	2011-06-06
ASH2L	23808	D14ERTD436E	100504663	23239880	ChIP-chip	MESC	2012-12-15
SMC3	13006	D14ERTD436E	100504663	20720539	ChIP-seq	MESC	2012-02-15
SMC1A	24061	D14ERTD436E	100504663	20720539	ChIP-seq	MESC	2012-02-15
NIPBL	71175	D14ERTD436E	100504663	20720539	ChIP-seq	MESC	2012-02-15
MED1	19014	D14ERTD436E	100504663	20720539	ChIP-seq	MESC	2012-02-15
MED12	59024	D14ERTD436E	100504663	20720539	ChIP-seq	MESC	2012-02-15
PRDM14	383491	D14ERTD436E	100504663	21183938	ChIP-seq	MESC	2011-01-25
YY1	22632	ATG14	100504663	21170310	ChIP-seq	MESC	2010-12-22
SMC3	13006	H2-EA	100504404	20720539	ChIP-seq	MESC	2012-02-15
SMC1A	24061	H2-EA	100504404	20720539	ChIP-seq	MESC	2012-02-15

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.