ESCAPE

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Interactions from Chip-seq/chip studies

Description:
The protein/DNA interactions table is extracted from ChIP-X studies. We collect interactions from supplementary Excel tables from ChIP-chip and ChIP-seq experiments. These interactions are also available in ChEA developed by the Ma'ayan laboratory . Altogether, the current version of ESCAPE includes 206,521 protein-DNA binding interactions in proximity to coding regions covering 48 ESC-relevant transcription factors and chromatin modifiers.

Number of entries: 206521

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sourceName	sourceID	targetName	targetID	pmid	chipType	cellType	modification_date
POU5F1	18999	0610006F02RIK	71664	16518401	chip-pet	MESC	2010-11-05
MYC	17869	0610006I08RIK	66836	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	0610006I08RIK	66836	19079543	ChIP-chip	MESC	2010-11-05
ZFP42	22702	0610006I08RIK	66836	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	0610006I08RIK	66836	20946988	ChIP-chip	MESC-J1	2010-11-05
MYC	78688	0610006I08RIK	66836	18555785	ChIP-seq	MESC	2010-11-05
E2F1	13555	0610006I08RIK	66836	18555785	ChIP-seq	MESC	2010-11-05
MED12	59024	0610006I08RIK	66836	20720539	ChIP-seq	MESC	2012-02-15
MYC	17869	0610006I08RIK	66836	19030024	ChIP-chip	MESC	2010-11-05
SETDB1	84505	0610006I08RIK	66836	19884257	ChIP-seq	MESC	2010-11-05
SETDB1	84505	0610006I08RIK	66836	19884255	ChIP-seq	MESC	2010-11-05
NIPBL	71175	0610006I08RIK	66836	20720539	ChIP-seq	MESC	2012-02-15
MED1	19014	0610006I08RIK	66836	20720539	ChIP-seq	MESC	2012-02-15
JARID1A	214899	0610006I08RIK	66836	20064375	ChIP-seq	MESC	2010-11-05
DMAP1	66233	0610006I08RIK	66836	20946988	ChIP-chip	MESC-J1	2010-11-05
POU5F1	18999	0610006K04RIK	68323	16518401	chip-pet	MESC	2010-11-05
JARID1A	214899	0610007C21RIK	381629	20064375	ChIP-seq	MESC	2010-11-05
TCFCP2L1	81879	0610007C21RIK	381629	18555785	ChIP-seq	MESC	2010-11-05
ZFX	22764	0610007C21RIK	381629	18555785	ChIP-seq	MESC	2010-11-05
KLF4	16600	0610007C21RIK	381629	18358816	ChIP-chip	MESC	2010-11-05
MYC	17869	0610007C21RIK	381629	18358816	ChIP-chip	MESC	2010-11-05
ESRRB	26380	0610007C21RIK	381629	0	ChIP-seq	MESC	2011-03-06
MAX	17187	0610007C21RIK	381629	20946988	ChIP-chip	MESC-J1	2010-11-05
MYC	17869	0610007C21RIK	381629	20946988	ChIP-chip	MESC-J1	2010-11-05
SIN3A	20466	0610007C21RIK	381629	21632747	ChIP-seq	MESC	2011-06-06
ZFP42	22702	0610007C21RIK	381629	18358816	ChIP-chip	MESC	2010-11-05
KLF4	16600	0610007C21RIK	381629	18555785	ChIP-seq	MESC	2010-11-05
MED1	19014	0610007C21RIK	381629	20720539	ChIP-seq	MESC	2012-02-15
NIPBL	71175	0610007C21RIK	381629	20720539	ChIP-seq	MESC	2012-02-15
MED12	59024	0610007C21RIK	381629	20720539	ChIP-seq	MESC	2012-02-15

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	sourceName	varchar(50)
	sourceID	int(11)
	targetName	varchar(50)
	targetID	int(11)
	pmid	int(11)
	chipType	varchar(50)
	cellType	varchar(50)
	modification_date	date

For more complicated searches either download the table and use your own SQL queries or contact us.