ESCAPE

Histone modification determined by Chip-seq/chip

Description:
Histone modification profiles of genes in ESCs, NPCs and MEFs etc. were converted to gene lists. We compiled the histone modification table by integrating results from ten studies covering a total of 107 histone modification markers in ESCs, iPSCs, Mouse Embryonic Fibroblasts (MEFs), Neural Progenitor Cells (NPCs) and whole brain cells.

Number of entries: 16881

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geneName	geneID	mESC_H3K9me3_19884255	mESC_H3K4me3_17603471	mESC_H3K27me3_17603471	mNPC_K4me3_17603471	mNPC_K27me3_17603471	mMEF_K4me3_17603471	mMEF_K27me3_17603471	mESC_H3K79me2_18692474	mESC_H3K36me3_18692474	mESC_H3K4me2_18600261	mNPC_H3K4me2_18600261	mWholeBrain_H3K4me2_18600261	mWholeBrain_H3K4me3_18600261	mNPC_H3K4me1_18600261	mESC_H3K4me1_18600261	hESC_H3K4me3_20682450	hESC_H3K27me3_20682450	H3K36ME3_IPS_DF_19_20944595	H3K27ME3_IPS-20B_20944595	H3K4ME3_IPS_DF_6_20944595	H3K27ME3_IPS_DF_6_20944595	H3K4ME3_IPS_DF_19_20944595	H3K9ME3_IPS_DF_19_20944595	H3K27AC_IPS_DF_6_20944595	H3K27ME3_IPS_DF_19_20944595	H3K27AC_IPS_DF_19_20944595	H3K4ME1_IPS_DF_19_20944595	H3K27ME3_IPS-15B_20944595	H3K9ME3_H1_20944595	H2BK15AC_H1_20944595	H2BK5AC_H1_20944595	H3K9AC_H1_20944595	H3K79ME1_H1_20944595	H3K4ME1_H1_20944595	H3K18AC_H1_20944595	H2BK120AC_H1_20944595	H3K4AC_H1_20944595	H3K79ME2_H1_20944595	H4K20ME1_H1_20944595	H3K4ME2_H1_20944595	H3K27AC_H1_20944595	H3K14AC_H1_20944595	H2BK20AC_H1_20944595	H2AK5AC_H1_20944595	H3K23AC_H1_20944595	H3K23ME2_H1_20944595	H2BK12AC_H1_20944595	H4K5AC_H1_20944595	H3K79ME2_H9_20944595	H4K20ME1_H9_20944595	H3K4ME2_H9_20944595	H3K23AC_H9_20944595	H3K4AC_H9_20944595	H2BK5AC_H9_20944595	H3K27ME3_H9_20944595	H3K56AC_H9_20944595	H3K4ME1_H9_20944595	H3K14AC_H9_20944595	H3K18AC_H9_20944595	H2AK5AC_H9_20944595	H2BK120AC_H9_20944595	H2BK20AC_H9_20944595	H3K79ME1_H9_20944595	H3K27AC_H9_20944595	H3K9AC_H9_20944595	H3K23ME2_H9_20944595	H3K27AC_IMR90_20944595	H2BK12AC_IMR90_20944595	H3K79ME1_IMR90_20944595	H4K5AC_IMR90_20944595	H3K14AC_IMR90_20944595	H3K23AC_IMR90_20944595	H2AK5AC_IMR90_20944595	H3K4ME2_IMR90_20944595	H2BK20AC_IMR90_20944595	H3K4ME1_IMR90_20944595	H2BK15AC_IMR90_20944595	H3K9ME1_IMR90_20944595	H3K18AC_IMR90_20944595	H2BK120AC_IMR90_20944595	H3K36ME3_IMR90_20944595	H4K91AC_IMR90_20944595	H3K4ME3_IMR90_20944595
PZP	11287	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AANAT	11298	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AATK	11302	0	1	1	1	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ABCA1	11303	1	1	0	1	0	1	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ABCA4	11304	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ABCA2	11305	1	1	0	1	0	1	0	0	0	1	1	1	1	1	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ABCG1	11307	0	1	0	0	1	1	1	0	0	1	1	1	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	1	1	0	0	0
ABI1	11308	0	1	0	1	0	1	0	1	0	1	1	1	1	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ABL1	11350	0	1	0	1	0	1	0	1	0	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ABL2	11352	0	1	0	1	0	1	0	1	0	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1
ACADL	11363	0	1	0	1	0	1	0	0	0	1	1	1	1	1	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACADM	11364	0	1	0	1	0	1	0	1	0	1	1	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACADVL	11370	0	1	0	1	0	1	0	0	0	1	1	1	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACADS	11409	0	1	0	1	0	1	0	1	1	1	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0
SLC33A1	11416	0	1	0	1	0	1	0	0	0	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACCN1	11418	1	1	1	0	1	0	1	0	0	1	0	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	1	0	1	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACCN2	11419	1	1	1	1	0	1	1	0	0	1	1	1	1	1	0	1	1	0	1	0	1	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACE	11421	0	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACHE	11423	0	1	1	0	0	0	1	0	0	1	1	1	1	0	0	1	1	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
APOC4	11425	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACO1	11428	0	1	0	1	0	1	0	0	0	1	1	1	1	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0
ACO2	11429	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACOX1	11430	0	1	0	1	0	1	0	0	0	1	0	0	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1
ACP1	11431	0	1	0	1	0	1	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACP2	11432	0	1	0	1	0	1	0	1	0	1	1	1	1	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
ACP5	11433	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACR	11434	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CHRNA1	11435	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	1	1	0	0	1	0	1	0
CHRNA4	11438	0	1	1	0	1	0	1	0	0	1	1	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CHRNA6	11440	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Operator	Field	Type	Equal/Not equal?	Value(s) (seperated by either , ; : tab space or return)
	geneName	varchar(50)
	geneID	int(11)
	mESC_H3K9me3_19884255	int(1)
	mESC_H3K4me3_17603471	int(1)
	mESC_H3K27me3_17603471	int(1)
	mNPC_K4me3_17603471	int(1)
	mNPC_K27me3_17603471	int(1)
	mMEF_K4me3_17603471	int(1)
	mMEF_K27me3_17603471	int(1)
	mESC_H3K79me2_18692474	int(1)
	mESC_H3K36me3_18692474	int(1)
	mESC_H3K4me2_18600261	int(1)
	mNPC_H3K4me2_18600261	int(1)
	mWholeBrain_H3K4me2_18600261	int(1)
	mWholeBrain_H3K27me3_18600261	int(1)
	mWholeBrain_H3K4me3_18600261	int(1)
	mNPC_H3K4me1_18600261	int(1)
	mESC_H3K4me1_18600261	int(1)
	hESC_H3K4me3_20682450	int(1)
	hESC_H3K27me3_20682450	int(1)
	H3K36ME3_IPS_DF_19_20944595	int(11)
	H3K27ME3_IPS-20B_20944595	int(11)
	H3K4ME3_IPS_DF_6_20944595	int(11)
	H3K9ME3_IPS_DF_6_20944595	int(11)
	H3K27ME3_IPS_DF_6_20944595	int(11)
	H3K4ME1_IPS_DF_6_20944595	int(11)
	H3K4ME3_IPS_DF_19_20944595	int(11)
	H3K9ME3_IPS_DF_19_20944595	int(11)
	H3K27AC_IPS_DF_6_20944595	int(11)
	H3K36ME3_IPS_DF_6_20944595	int(11)
	H3K27ME3_IPS_DF_19_20944595	int(11)
	H3K27AC_IPS_DF_19_20944595	int(11)
	H3K4ME1_IPS_DF_19_20944595	int(11)
	H3K27ME3_IPS-15B_20944595	int(11)
	H3K9ME3_H1_20944595	int(11)
	H2BK15AC_H1_20944595	int(11)
	H2BK5AC_H1_20944595	int(11)
	H3K9AC_H1_20944595	int(11)
	H3K79ME1_H1_20944595	int(11)
	H3K4ME1_H1_20944595	int(11)
	H4K91AC_H1_20944595	int(11)
	H3K18AC_H1_20944595	int(11)
	H3K56AC_H1_20944595	int(11)
	H3K4ME3_H1_20944595	int(11)
	H3K27ME3_H1_20944595	int(11)
	H2BK120AC_H1_20944595	int(11)
	H3K36ME3_H1_20944595	int(11)
	H3K4AC_H1_20944595	int(11)
	H3K79ME2_H1_20944595	int(11)
	H4K20ME1_H1_20944595	int(11)
	H3K4ME2_H1_20944595	int(11)
	H3K27AC_H1_20944595	int(11)
	H3K14AC_H1_20944595	int(11)
	H2BK20AC_H1_20944595	int(11)
	H2AK5AC_H1_20944595	int(11)
	H3K23AC_H1_20944595	int(11)
	H3K23ME2_H1_20944595	int(11)
	H2BK12AC_H1_20944595	int(11)
	H4K5AC_H1_20944595	int(11)
	H3K79ME2_H9_20944595	int(11)
	H4K20ME1_H9_20944595	int(11)
	H3K4ME2_H9_20944595	int(11)
	H4K5AC_H9_20944595	int(11)
	H3K23AC_H9_20944595	int(11)
	H3K36ME3_H9_20944595	int(11)
	H3K4AC_H9_20944595	int(11)
	H2BK5AC_H9_20944595	int(11)
	H3K27ME3_H9_20944595	int(11)
	H4K91AC_H9_20944595	int(11)
	H3K56AC_H9_20944595	int(11)
	H3K4ME1_H9_20944595	int(11)
	H4K8AC_H9_20944595	int(11)
	H3K14AC_H9_20944595	int(11)
	H3K18AC_H9_20944595	int(11)
	H2AK5AC_H9_20944595	int(11)
	H3K9ME3_H9_20944595	int(11)
	H2BK120AC_H9_20944595	int(11)
	H2BK20AC_H9_20944595	int(11)
	H3K4ME3_H9_20944595	int(11)
	H3K79ME1_H9_20944595	int(11)
	H2BK12AC_H9_20944595	int(11)
	H3K27AC_H9_20944595	int(11)
	H3K9AC_H9_20944595	int(11)
	H3K23ME2_H9_20944595	int(11)
	H3K27AC_IMR90_20944595	int(11)
	H2BK12AC_IMR90_20944595	int(11)
	H3K4AC_IMR90_20944595	int(11)
	H3K79ME1_IMR90_20944595	int(11)
	H4K5AC_IMR90_20944595	int(11)
	H4K8AC_IMR90_20944595	int(11)
	H3K14AC_IMR90_20944595	int(11)
	H3K23AC_IMR90_20944595	int(11)
	H2AK5AC_IMR90_20944595	int(11)
	H3K4ME2_IMR90_20944595	int(11)
	H2BK20AC_IMR90_20944595	int(11)
	H3K4ME1_IMR90_20944595	int(11)
	H2BK15AC_IMR90_20944595	int(11)
	H3K9AC_IMR90_20944595	int(11)
	H3K56AC_IMR90_20944595	int(11)
	H3K79ME2_IMR90_20944595	int(11)
	H3K9ME1_IMR90_20944595	int(11)
	H3K27ME3_IMR90_20944595	int(11)
	H4K20ME1_IMR90_20944595	int(11)
	H3K18AC_IMR90_20944595	int(11)
	H2BK120AC_IMR90_20944595	int(11)
	H3K36ME3_IMR90_20944595	int(11)
	H4K91AC_IMR90_20944595	int(11)
	H3K4ME3_IMR90_20944595	int(11)
	H3K9ME3_IMR90_20944595	int(11)

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References for Data in this Table:

Histone modification determined by Chip-seq/chip